📦 orthofinder-linux-intel-3.1.0.tar.gz

Faster, leaner, and ready for thousands of genomes

This is the new release of OrthoFinder, to allow scalable analysis. This version replaces the beta version of OrthoFinder v3 (v3.0.1b1), which was released October 7th 2024.

New in this release

  • All output files now refer to phylogenetic hierarchical orthogroups, rather than orthogroups solely determined by MCL clustering
  • FAMSA is now the default program for multiple sequence alignment
  • Accurate progress bar to monitor the progress of each step of the OrthoFinder workflow
  • The ability to use a custom config file is now available to conda users